Open Analysis and Synthesis Infrastructure for Science
Welcome to the OASIS, a hub for open analysis and synthesis in Environmental Data Science.
📚 Data & Analytics Libraries¶
Data Library
Organizational hub for ESIIL datasets.
Analytics Library
Repository for data harmonization and analytics.
Container Image Library
Browse available container images for ESIIL computing.
Advanced Textbook
Comprehensive guide to environmental data science.
🚀 NSF Synthesis Working Groups¶
BioViewPoint
Visualization tools for biodiversity data.
Extreme Wildfire
Investigating extreme wildfire behavior.
Fungal Dispersal
ESIIL working group on fungal dispersal.
Macrophenology
Macroecological patterns in phenology.
Maka-Sitomniya
Research on traditional ecological knowledge.
AI for Natural Methane
Harmonizing natural methane datasets using AI.
Zooplankton Indicator Dataset
Dataset and tools for zooplankton as environmental indicators.
🎓 NSF Synthesis Postdoc Researcher Projects¶
These repositories represent postdoc-led research initiatives at ESIIL.
Datacube Sandbox
Training and practice space for data cubes.
Biotic Niche Modeling
Research on species niche dynamics.
Nutrient Flows
Analysis of seafood trade and sustainability.
LTER Material Legacies
Impact of dead tree legacies on forest resilience.
Team Science
Studying scientific collaboration networks.
Opt Decision Making
Optimization and decision science.
Water Carbon Dynamics
Investigating water-carbon interactions.
Cultural ES WildfireRx
Wildfire effects on cultural ecosystem services.
SCE Wildfire
Socioecological impacts of wildfire.
Tundra Shrub Expansion
Remote sensing tools for alpine ecosystems.
🔬 Staff and Affiliate Research Projects¶
These repositories represent broader research efforts contributing to environmental data science.
| Name | Description | Link |
|---|---|---|
| SpectralBEF | Spectral analysis of biodiversity-ecosystem functioning. | 🔗 Website |
| GEDI-ECOSTRESS Data Project | Aligning GEDI and ECOSTRESS datasets for ML applications. | 🔗 GitHub |
🎟️ Events & Summits¶
Major ESIIL-hosted and affiliated events.
Innovation Summit 2025
Official repository for the ESIIL Innovation Summit 2025.
FIRE Plan 2024
Planning and strategy for fire management.
Innovation Summit 2024
Official repo for the ESIIL Innovation Summit 2024.
Forest Carbon Codefest
Hands-on coding event for forest carbon research.
HYR-SENSE
Remote sensing.
AGU 2023 Innovation Session
Maximizing Stakeholder Engagement in Open Environmental Data Science.
🛠️ OASIS Templates & Reusable Frameworks¶
Templates to streamline project development and research collaboration.
Postdoc OASIS
Template for postdoc research documentation.
Working Group OASIS
Central hub for information on ESIIL working groups.
Base GitHub Pages
Starter repository for GitHub Pages projects.
Education OASIS
Template for ESIIL education students to create their own OASIS.
Slideshow OASIS
Basic slideshow template for presentations.
📖 Tutorials¶
Guides and walkthroughs to help researchers and students learn new tools and techniques.
| Name | Description | Link |
|---|---|---|
| Haskell Data Cube | Creating data cubes with multi-source remote sensing data. | 🔗 GitHub |
| CI/CD Demo | Demonstration repository for continuous integration and deployment. | 🔗 GitHub |
| Haskell API Demo | Sensing the Earth workshop demonstration. | 🔗 GitHub |
🏗️ CI Infrastructure & Tools¶
Repositories focused on software, data infrastructure, and computational tools.
Docker
Private repository for containerized workflows and CI/CD.
CyVerse Utils
Utilities for working with CyVerse infrastructure.
OASIS Docker Demo
Public demonstration of Dockerized workflows.
Min Docker Demo
Minimal demonstration for Docker containers.
CyVerse Issues
Documenting known issues in CyVerse workflows.
Development Schedule
Living task list and timeline for OASIS development.
🎓 Teaching Resources¶
Repositories containing materials for courses, workshops, and tutorials.
| Name | Description | Link |
|---|---|---|
| Pre-Innovation Summit Training | Repository for all things pre-innovation-summit-training. | 🔗 Website |
| EDS Demo | Example repository for environmental data science education. | 🔗 Website |
| Git & GitHub Fundamentals | GitHub Classroom-created fundamentals course. | 🔗 GitHub |
| WG PI Orientation | Orientation materials for ESIIL working group PIs. | 🔗 Website |
❌ To Be Deleted¶
These repositories are marked for removal.
| Name | Description | Link |
|---|---|---|
| Shannon-Boldt | Private repository, marked for deletion. | 🔗 GitHub |
| Ty Ed Demo | One-time use education repository. | 🔗 Website |
| Ty Test | Single-use education test repository. | 🔗 Website |
🏛️ Group Sub-Repositories¶
This section contains sub-repositories from various events, including the Innovation Summit, HYR-SENSE, FCC24, and Hackathon 2023. These repos represent collaborative breakout group projects and associated work.
🌟 Innovation Summit 2025 — Breakout Groups¶
| Name | Description | Link |
|---|---|---|
| 1. Defining Tipping Points And Transformation | Breakout group from the Innovation Summit 2025. | 🔗 Website |
| 2. Stressors Order Duration Frequency Intensity | Breakout group from the Innovation Summit 2025. | 🔗 Website |
| 3. Abrupt Vs Gradual Shifts Rate Factors | Breakout group from the Innovation Summit 2025. | 🔗 Website |
| 4. Stressors Food Web Connectivity Stability | Breakout group from the Innovation Summit 2025. | 🔗 Website |
| 5. Historic Biodiversity Human Infrastructure | Breakout group from the Innovation Summit 2025. | 🔗 Website |
| 6. Unsustainable Land Use Agriculture Behavior Change Capacity | Breakout group from the Innovation Summit 2025. | 🔗 Website |
| 7. Policy Law Indigenous Sacred Sites | Breakout group from the Innovation Summit 2025. | 🔗 Website |
| 8. System Dynamics Early Warning Signals | Breakout group from the Innovation Summit 2025. | 🔗 Website |
| 9. Anomaly Detection Coral Reef Remote Sensing | Breakout group from the Innovation Summit 2025. | 🔗 Website |
| 10. Ecoregional Models PNW Regime Shifts Hazards | Breakout group from the Innovation Summit 2025. | 🔗 Website |
| 11. Transformations Ecosystem Services | Breakout group from the Innovation Summit 2025. | 🔗 Website |
| 12. Transformations Species Interactions Restoration | Breakout group from the Innovation Summit 2025. | 🔗 Website |
| 13. Sacred Spaces Mining Tourism | Breakout group from the Innovation Summit 2025. | 🔗 Website |
| 14. Social Impacts Measurement Evaluation | Breakout group from the Innovation Summit 2025. | 🔗 Website |
| 15. Resilience Rare Hydrologic Events Management | Breakout group from the Innovation Summit 2025. | 🔗 Website |
| 16. Indigenous Approaches Co Management Hegemonic Responses | Breakout group from the Innovation Summit 2025. | 🔗 Website |
| 17. Management Practices Prevent Thresholds | Breakout group from the Innovation Summit 2025. | 🔗 Website |
| 18. Cross Cutting Data Interoperability Harmonization | Breakout group from the Innovation Summit 2025. | 🔗 Website |
| 19. Wildcard Topic (19) | Breakout group from the Innovation Summit 2025. | 🔗 Website |
| 20. Wildcard Topic (20) | Breakout group from the Innovation Summit 2025. | 🔗 Website |
🌟 Innovation Summit 2024 Breakout Groups¶
| Name | Description | Link |
|---|---|---|
| Innovation-Summit-2024__3 | Breakout group 3 from the Innovation Summit 2024. | 🔗 GitHub |
| Innovation-Summit-2024__4 | Breakout group 4 from the Innovation Summit 2024. | 🔗 GitHub |
| Innovation-Summit-2024__5 | Breakout group 5 from the Innovation Summit 2024. | 🔗 GitHub |
| Innovation-Summit-2024__6 | Breakout group 6 from the Innovation Summit 2024. | 🔗 GitHub |
🌍 HYR-SENSE Workshop Group Repositories¶
| Name | Description | Link |
|---|---|---|
| HYR-SENSE-Alaska | HYR-SENSE Alaska breakout group. | 🔗 GitHub |
| HYR-SENSE-Tyler | HYR-SENSE Tyler breakout project. | 🔗 GitHub |
| HYR-SENSE-VTaho | HYR-SENSE Vermont-Tahoe research group. | 🔗 GitHub |
| HYR-SENSE-MaryB | HYR-SENSE research led by Mary B. | 🔗 GitHub |
🔬 FCC24 Group Repositories¶
| Name | Description | Link |
|---|---|---|
| FCC24_Group_1 | Group 1 from FCC24. | 🔗 GitHub |
| FCC24_Group_2 | Group 2 from FCC24. | 🔗 GitHub |
| FCC24_Group_3 | Group 3 from FCC24. | 🔗 GitHub |
| FCC24_Group_4 | Group 4 from FCC24. | 🔗 GitHub |
| FCC24_Group_5 | Group 5 from FCC24. | 🔗 GitHub |
| FCC24_Group_6 | Group 6 from FCC24. | 🔗 GitHub |
🚀 Hackathon 2023 Group Repositories¶
| Name | Description | Link |
|---|---|---|
| hackathon2023_A | Breakout group A from Hackathon 2023. | 🔗 GitHub |
| hackathon2023_B | Breakout group B from Hackathon 2023. | 🔗 GitHub |
| hackathon2023_C | Breakout group C from Hackathon 2023. | 🔗 GitHub |
| hackathon2023_D | Breakout group D from Hackathon 2023. | 🔗 GitHub |
| hackathon2023_E | Breakout group E from Hackathon 2023. | 🔗 GitHub |
| hackathon2023_F | Breakout group F from Hackathon 2023. | 🔗 GitHub |
| hackathon2023_G | Breakout group G from Hackathon 2023. | 🔗 GitHub |
📧 Contact: esiil-support@cu.edu